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Methods
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AddState
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AddState (
self,
index,
label='None',
)
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AlphabetType
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AlphabetType ( self )
return the type of emission domain
XXX should call the method in HMMAlphabet
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ClassType
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ClassType ( self )
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Clear
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Clear ( self )
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DeleteState
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DeleteState ( self, index )
The method only deletes a map between index and its state object.
The caller must delete the corresponding vertex in the owner Graph self.G.
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DistributionType
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DistributionType ( self )
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OpenXML
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OpenXML ( self, fileName_file_or_dom )
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SaveAs
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SaveAs ( self, fileName )
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SaveAsGHMM
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SaveAsGHMM ( self, fileName )
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WriteGHMM
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WriteGHMM ( self, fileName )
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WriteXML
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WriteXML ( self, fileName )
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__init__
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__init__ (
self,
XMLFileName=None,
G=None,
)
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buildMatrices
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buildMatrices ( self )
return [alphabets_code, A, B, pi, state_orders]
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fromDOM
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fromDOM ( self, XMLNode )
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getAlphabets
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getAlphabets ( self )
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getBackgroundDist
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getBackgroundDist ( self )
Return a pair of two dictionaries: (distribution, its orders):
a distribution is a list of real values of length N^(order+1).
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getLabels
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getLabels ( self )
returns list of state labels and unique labels
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getStateAlphabets
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getStateAlphabets ( self )
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getStateDurations
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getStateDurations ( self )
returns a list of the minimal number of times a state is evaluated
before the HMM changes to another state.
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getTiedStates
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getTiedStates ( self )
returns list of tied states, entry is None if a state isn't to
any other state, returns an empty list, if no state is tied
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modelCheck
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modelCheck ( self )
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Exceptions
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AlphabetErrorType( "Alphabet object is empty. You must create alphabet before saving." )
NotValidHMMType( "Initial state is not specified." )
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toDOM
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toDOM (
self,
XMLDoc,
XMLNode,
)
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