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Methods
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__del__
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__del__ ( self )
Deallocation of C sequence struct.
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__getitem__
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__getitem__ ( self, index )
Return the symbol at position index.
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__init__
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__init__ (
self,
emissionDomain,
sequenceInput,
labelDomain=None,
labelInput=None,
ParentSequenceSet=None,
)
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Exceptions
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IOError, 'File ' + str( sequenceInput ) + ' not found.'
NoValidCDataType, "C data type " + str( self.emissionDomain.CDataType ) + " invalid."
UnknownInputType, "inputType " + str(type( sequenceInput ) ) + " not recognized."
badCPointer, "Use SequenceSet for multiple sequences."
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__len__
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__len__ ( self )
Returns the length of the sequence.
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__setitem__
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__setitem__ (
self,
index,
value,
)
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__str__
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__str__ ( self )
Defines string representation.
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getSeqLabel
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getSeqLabel ( self )
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getStateLabel
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getStateLabel ( self )
Returns the labeling of the sequence in internal representation
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Exceptions
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IndexOutOfBounds( str( 0 ) + " is out of bounds, only " + str( self.cseq.seq_number ) + "labels" )
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getWeight
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getWeight ( self )
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sequenceSet
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sequenceSet ( self )
Return a one-element SequenceSet with this sequence.
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setSeqLabel
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setSeqLabel ( self, value )
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setWeight
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setWeight ( self, value )
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write
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write ( self, fileName )
Writes the EmissionSequence into file fileName.
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