- 
 N N
- Number of states 
- 
 M M
- Number of outputs 
- 
 s s
- Vector of the states 
- 
 prior prior
- The a priori probability for the model.
- 
 model_type model_type
- Contains bit flags for varios model extensions such as kSilentStates, kTiedEmissions (see ghmmh for a complete list)
- 
 silent silent
- Flag variables for each state indicating whether it is emitting or not.
- 
 maxorder maxorder
- Int variable for the maximum level of higher order emissions 
- 
 emission_history emission_history
- saves the history of emissions as int,  the nth-last emission is (emission_history * |alphabet|^n+1) % |alphabet| see 
- 
 tied_to tied_to
- Flag variables for each state indicating whether the states emissions are tied to another state.
- 
 Note: State store order information of the emissions. Note: State store order information of the emissions.
- 
 topo_order topo_order
- (WR) added these variables for topological ordering of silent states  Condition: topo_order != NULL iff (model_type & kSilentStates) == 1
- 
 pow_lookup pow_lookup
- pow_lookup is a array of precomputed powers
The complete HMM. Contains all parameters, that define a HMM.
Alphabetic index
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