double smodel_prob_distance

(smodel* cm0, smodel* cm, int maxT,
  int symmetric, int verbose)

Computes probabilistic distance of two models

Documentation

Computes probabilistic distance of two models

Parameters:

cm0 - smodel used for generating random output
cm - smodel to compare with
maxT - maximum output length (for HMMs with absorbing states multiple sequences with a toal length of at least maxT will be generated)
symmetric - flag, whether to symmetrize distance (not implemented yet)
verbose - flag, whether to monitor distance in 40 steps. Prints to stdout (yuk!)

Returns:

the distance

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