int smodel_likelihood

(smodel* smo, sequence_d_t* sqd,
  double* log_p)

Computes sum over all sequence of seq_w * log( P ( O|lambda ) ).

Documentation

Computes sum over all sequence of seq_w * log( P ( O|lambda ) ). If a sequence can't be generated by smo error cost of seq_w * PRENALTY_LOGP are imposed.

Parameters:

- smo smodel
sqd - sequence struct
log - \_p evaluated log likelihood

Returns:

n: number of evaluated sequences, -1: error

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